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amplicon_pipeline_readme [2014/10/03 01:16]
dave [What we provide]
amplicon_pipeline_readme [2014/10/03 01:25]
dave [What we provide]
Line 22: Line 22:
   * Representative Sequence   * Representative Sequence
  
 +The processing statistics file contains the following columns for each sample:
 +  * Sample
 +  * Total Read Count R1
 +  * Total Read Count R2
 +  * Reads Passing QC R1
 +  * Reads Passing QC R2
 +  * QIIME pre-filtered reads R1 (reads with < 60% match to any sequence in the database)
 +  * QIIME unclustered singletons R1 (reads that do not cluster with any other reads)
 +  * Reads in complete OTU table R1
 +  * Reads in filtered OTU table (>0.05% abundance) R1
  
  
 Kind Regards, Kind Regards,
 The ACE Team The ACE Team
amplicon_pipeline_readme.txt ยท Last modified: 2016/02/03 04:08 by brian
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